Nexus | QuantiSNP | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Region | Cytoband location | Event | Region length | Freq. in cases (%) | Freq. in controls (%) | p-value | % of CNV Overlap* | Region | # SNPs in segment | Freq. in cases (%) | Freq. in controls (%) | p-value |
chr1:1,082,510-1,109,835 | p36.33 | CN Loss | 27325 | 14.6 | 0.0 | 7.33E-11 | 100 | chr1:1,064,487-1,096,336 | 8 | 0.0 | 0.3 | 0.62 |
chr1:192,838,687-193,008,078 | q31.3 | CN Gain | 169391 | 15.6 | 0.0 | 1.29E-11 | 8 | No overlapping CNV | ─ | 0.0 | 0.0 | NA |
chr3:90,524,766-90,576,572 | p11.1 | CN Gain | 51806 | 14.6 | 0.0 | 7.33E-11 | 100 | chr3:90,421,209-90,576,572 | 19 | 16.7 | 0.0 | 4.06E-16 |
chr5:104,661,153-104,676,508 | q21.3 | CN Gain | 15355 | 14.6 | 0.0 | 7.33E-11 | 100 | chr5:104,667,691-104,675,112 | 5 | 1.0 | 0.0 | 0.05 |
chr6:31,945,137-31,947,946 | p21.32 | CN Loss | 2809 | 14.6 | 0.0 | 7.33E-11 | 0 | No overlapping CNV | ─ | 0.0 | 0.0 | NA |
chr6:62,208,962-62,262,670 | q11.1 | CN Gain | 53708 | 17.7 | 0.5 | 4.66E-11 | 100 | chr6:62,176,064-62,260,258 | 11 | 15.6 | 0.0 | 3.55E-15 |
chr7:61,644,365-62,087,478 | q11.21 | CN Gain | 443113 | 28.1 | 0.0 | 4.93E-21 | 100 | chr7:61,667,556-61,990,710 | 18 | 7.3 | 0.0 | 9.79E-08 |
chr8:145,462,650-145,641,721 | q24.3 | CN Loss | 179071 | 17.7 | 0.0 | 3.87E-13 | 100 | No overlapping CNV | ─ | 0.0 | 0.0 | NA |
chr9:138,620,572-138,764,838 | q34.3 | CN Loss | 144266 | 15.6 | 0.0 | 1.29E-11 | 100 | No overlapping CNV | ─ | 0.0 | 0.0 | NA |
chr9:9,793,206-9,814,023 | p23 | CN Gain | 20817 | 15.6 | 0.0 | 1.29E-11 | 100 | chr9:9,778,666-9,809,028 | 21 | 1.0 | 0.0 | 0.05 |
chr11:50,339,475-50,370,127 | p11.12 | CN Gain | 30652 | 21.9 | 0.0 | 3.08E-16 | 100 | chr11:50,654,023-50,961,054 | 6 | 5.2 | 0.0 | 6.94E-06 |
chr11:54,468,566-54,554,469 | q11 | CN Gain | 85903 | 20.8 | 0.3 | 3.30E-14 | 100 | chr11:54,468,566-54,533,370 | 19 | 13.5 | 0.3 | 4.62E-12 |
chr12:36,616,479-36,650,608 | q12 | CN Gain | 34129 | 19.8 | 0.5 | 1.66E-12 | 100 | chr12:36,301,572-36,667,312 | 23 | 9.4 | 0.3 | 2.24E-08 |
chr14:104,706,668-104,721,437 | q32.33 | CN Loss | 14769 | 14.6 | 0.0 | 7.33E-11 | 100 | chr14:104,688,087-104,717,224 | 10 | 1.0 | 0.0 | 0.05 |
chr16:32,405,679-32,504,942 | p11.2 | CN Gain | 99263 | 45.8 | 4.2 | 1.98E-22 | 100 | chr16:32,443,063-32,460,991 | 23 | 45.8 | 20.1 | 1.96E-07 |
chr18:15,069,391-15,093,669 | p11.21 | CN Loss | 24278 | 14.6 | 0.0 | 7.33E-11 | 100 | chr18:15,045,092-15,219,051 | 20 | 8.3 | 0.0 | 1.17E-08 |
chr19:32,445,280-32,903,861 | q12 | CN Gain | 458581 | 24.0 | 0.3 | 1.65E-16 | 100 | chr19:32,520,504-32,810,457 | 28 | 11.5 | 0.3 | 3.27E-10 |