From: Molecular epidemiology of SARS-CoV-2 isolated from COVID-19 family clusters
No. | NA position* | Gene/ Region | Number of SNP | NA change (SNP) | Type of base change | Entropy values | Frequency | Type of mutation | AA changes (position)# |
---|---|---|---|---|---|---|---|---|---|
1 | 1154 | NSP2 | 7 | C → T | Transition | 0.21456 | 2 | Missense | A205V |
2 | 1280 |  |  | C → T | Transition | 0.34883 | 2 | Missense | V247A |
3 | 1307 |  |  | C → T | Transition | 0.45056 | 3 | Missense | T256I |
4 | 1501 |  |  | C → A | Transversion | 0.34883 | 2 | Missense | Q321K |
5 | 1845 |  |  | C → T | Transition | 0.21456 | 1 | Synonymous | N435N |
6 | 1998 |  |  | C → T | Transition | 0.21456 | 1 | Synonymous | T486T |
7 | 2247 |  |  | A → G | Transition | 0.21456 | 1 | Synonymous | R569R |
8 | 2772 | NSP3 | 13 | C → T | Transition | 0.45056 | 15 | Synonymous | F106F |
9 | 3264 |  |  | T → C | Transition | 0.21456 | 1 | Synonymous | D270D |
10 | 3350 |  |  | T → C | Transition | 0.21456 | 1 | Synonymous | V299A |
11 | 3819 |  |  | C → T | Transition | 0.52971 | 4 | Synonymous | G443G |
12 | 4489 |  |  | C → T | Transition | 0.21456 | 1 | Missense | P679S |
13 | 4919 |  |  | C → T | Transition | 0.66825 | 13 | Missense | P822L |
14 | 5519 |  |  | C → T | Transition | 0.21456 | 1 | Missense | T1022I |
15 | 5541 |  |  | C → T | Transition | 0.34883 | 2 | Synonymous | C1029C |
16 | 5990 |  |  | C → T | Transition | 0.21456 | 1 | Missense | A1179V |
17 | 6047 |  |  | C → A | Transversion | 0.21456 | 1 | Missense | T1198K |
18 | 6515 |  |  | T → G | Transversion | 0.21456 | 1 | Missense | F1354C |
19 | 7374 |  |  | C → T | Transition | 0.21456 | 1 | Synonymous | F1640F |
20 | 7448 |  |  | C → T | Transition | 0.21456 | 1 | Missense | P1665L |
21 | 8981 | NSP4 | 1 | C → T | Transition | 0.21456 | 1 | Missense | A231V |
22 | 9824 | NSP5 | 4 | A → G | Transition | 0.52971 | 4 | Missense | K12R |
23 | 9936 |  |  | G → T | Transversion | 0.21456 | 1 | Missense | M49I |
24 | 10242 |  |  | C → T | Transition | 0.68696 | 8 | Synonymous | N151N |
25 | 10339 |  |  | C → T | Transition | 0.21456 | 1 | Missense | P184S |
26 | 10818 | NSP6 | 1 | G → T | Transversion | 0.21456 | 1 | Missense | L37F |
27 | 11887 | NSP8 | 2 | G → A | Transition | 0.21456 | 1 | Missense | A21T |
28 | 12174 |  |  | C → T | Transition | 0.21456 | 1 | Synonymous | P116P |
29 | 12544 | NSP9 | 1 | C → T | Transition | 0.21456 | 1 | Missense | L42F |
30 | 13465 | NSP12 (RdRp) | 12 | C → T | Transition | 0.21456 | 1 | Missense | A97V |
31 | 13790 |  |  | G → T | Transversion | 0.21456 | 1 | Synonymous | L205L |
32 | 13855 |  |  | C → T | Transition | 0.21456 | 1 | Missense | P227L |
33 | 13918 |  |  | C → T | Transition | 0.52971 | 3 | Missense | T248I |
34 | 14027 |  |  | C → T | Transition | 0.21456 | 1 | Synonymous | D284D |
35 | 14143 |  |  | C → T | Transition | 0.45056 | 15 | Missense | P323L |
36 | 14429 |  |  | C → T | Transition | 0.21456 | 1 | Synonymous | D418D |
37 | 15141 |  |  | G → T | Transversion | 0.21456 | 1 | Missense | A656S |
38 | 15278 |  |  | G → T | Transversion | 0.21456 | 1 | Synonymous | T701T |
39 | 15500 |  |  | A → G | Transition | 0.21456 | 1 | Synonymous | L775L |
40 | 15849 |  |  | C → T | Transition | 0.34883 | 2 | Missense | H892Y |
41 | 15891 |  |  | A → G | Transition | 0.21456 | 1 | Missense | M906V |
42 | 16130 | NSP13 | 8 | A → T | Transversion | 0.45056 | 3 | Synonymous | P53P |
43 | 16196 |  |  | C → T | Transition | 0.21456 | 1 | Synonymous | H75H |
44 | 16351 |  |  | C → T | Transition | 0.21456 | 1 | Missense | T127I |
45 | 16382 |  |  | G → T | Transversion | 0.52971 | 4 | Synonymous | T137T |
46 | 16429 |  |  | C → T | Transition | 0.21456 | 1 | Missense | T153I |
47 | 16476 |  |  | G → T | Transversion | 0.21456 | 1 | Missense | V169F |
48 | 16745 |  |  | C → T | Transition | 0.21456 | 1 | Synonymous | I258I |
49 | 17699 |  |  | G → T | Transversion | 0.21456 | 1 | Missense | M576I |
50 | 18382 | NSP14 | 4 | C → T | Transition | 0.21456 | 1 | Missense | P203L |
51 | 18479 |  |  | C → T | Transition | 0.68696 | 8 | Synonymous | Y235Y |
52 | 18612 |  |  | C → T | Transition | 0.59084 | 14 | Synonymous | L280L |
53 | 18737 |  |  | A → G | Transition | 0.21456 | 1 | Synonymous | L321L |
54 | 19859 | NSP15 | 2 | T → C | Transition | 0.21456 | 1 | Synonymous | I168I |
55 | 20364 |  |  | C → T | Transition | 0.21456 | 1 | Missense | H337Y |
56 | 20843 | NSP16 | 2 | C → T | Transition | 0.21456 | 1 | Synonymous | F150F |
57 | 21058 |  |  | A → G | Transition | 0.21456 | 2 | Missense | Y222C |
58 | 21310 | Spike (S) | 12 | C → T | Transition | 0.34883 | 2 | Missense | L5F |
59 | 21387 |  |  | T → C | Transition | 0.21456 | 1 | Synonymous | N30N |
60 | 21477 |  |  | C → T | Transition | 0.52971 | 4 | Synonymous | S60S |
61 | 21483 |  |  | T → C | Transition | 0.21456 | 1 | Synonymous | V62V |
62 | 21544 |  |  | G → C | Transversion | 0.21456 | 1 | Missense | V83L |
63 | 21935 |  |  | T → C | Transition | 0.52971 | 4 | Missense | V213A |
64 | 22069 |  |  | T → C | Transition | 0.21456 | 1 | Missense | W258R |
65 | 23138 |  |  | A → G | Transition | 0.34883 | 16 | Missense | D614G |
66 | 23328 |  |  | G → T | Transversion | 0.21456 | 1 | Missense | Q677H |
67 | 23664 |  |  | C → T | Transition | 0.21456 | 1 | Synonymous | Y789Y |
68 | 23729 |  |  | A → T | Transversion | 0.21456 | 1 | Missense | N811I |
69 | 23928 |  |  | G → T | Transversion | 0.21456 | 1 | Synonymous | L877L |
70 | 25288 | NS3 | 6 | C → T | Transition | 0.21456 | 1 | Missense | A54V |
71 | 25298 |  |  | G → T | Transversion | 0.59084 | 14 | Missense | Q57H |
72 | 25349 |  |  | C → T | Transition | 0.34883 | 2 | Synonymous | S74S |
73 | 25422 |  |  | G → T | Transversion | 0.21456 | 1 | Missense | A99S |
74 | 25579 |  |  | C → T | Transition | 0.21456 | 1 | Missense | T151I |
75 | 25791 |  |  | G → T | Transversion | 0.21456 | 1 | Missense | D222Y |
76 | 26470 | M | 3 | C → T | Transition | 0.59084 | 14 | Synonymous | Y71Y |
77 | 26536 |  |  | C → A | Transversion | 0.34883 | 2 | Synonymous | L93L |
78 | 26602 |  |  | A → G | Transition | 0.66825 | 7 | Synonymous | E115E |
79 | 27345 | NS7a | 1 | C → T | Transition | 0.21456 | 1 | Missense | H73Y |
80 | 27808 | NS8 | 1 | G → A | Transition | 0.21456 | 1 | Synonymous | L60L |
81 | 28046 | N | 14 | C → T | Transition | 0.21456 | 1 | Missense | P13L |
82 | 28363 |  |  | G → T | Transversion | 0.52971 | 4 | Missense | A119S |
83 | 28470 |  |  | T → C | Transition | 0.21456 | 1 | Synonymous | N154N |
84 | 28479 |  |  | C → T | Transition | 0.21456 | 1 | Synonymous | I157I |
85 | 28487 |  |  | A → G | Transition | 0.21456 | 1 | Missense | Q160R |
86 | 28586 |  |  | G → T | Transversion | 0.52971 | 4 | Missense | S193I |
87 | 28593 |  |  | A → T | Transversion | 0.21456 | 1 | Missense | R195S |
88 | 28603 |  |  | C → T | Transition | 0.21456 | 1 | Missense | P199S |
89 | 28616 |  |  | G → A | Transition | 0.34883 | 2 | Missense | R203K |
90 | 28617 |  |  | G → A | Transition | 0.34883 | 2 |  |  |
91 | 28618 |  |  | G → C | Transversion | 0.34883 | 2 | Missense | G204R |
92 | 28710 |  |  | G → T | Transversion | 0.21456 | 1 | Missense | M234I |
93 | 28944 |  |  | A → G | Transition | 0.21456 | 1 | Synonymous | S312S |
94 | 29094 |  |  | A → T | Transversion | 0.34883 | 2 | Synonymous | T362T |