Table 2 The basic information of STAT4 polymorphisms
From: Association between STAT4 gene polymorphism and type 2 diabetes risk in Chinese Han population
Gene | SNP ID | Chr:Position | Alleles (A/B) | Call rate | MAF | HWE (p Value) | Haploreg 4.1 | SNPinfo web serve | |
|---|---|---|---|---|---|---|---|---|---|
Cases | Controls | ||||||||
STAT4 | rs3821236 | Chr2: 191902758 | A/G | 100% | 0.479 | 0.427 | 0.784 | Promoter histone marks; Enhancer histone marks; Motifs changed; NHGRI/EBI GWAS hits; GRASP QTL hits; Selected eQTL hits | |
STAT4 | rs11893432 | Chr2: 191921874 | G/C | 100% | 0.483 | 0.441 | 0.928 | Enhancer histone marks; Motifs changed; Selected eQTL hits | |
STAT4 | rs11889341 | Chr2: 191943742 | T/C | 99.3% | 0.355 | 0.330 | 0.545 | Promoter histone marks; Enhancer histone marks; Motifs changed; NHGRI/EBI GWAS hits; | |
STAT4 | rs7574865 | Chr2: 191964633 | T/G | 100% | 0.347 | 0.327 | 0.223 | Enhancer histone marks; Motifs changed; NHGRI/EBI GWAS hits; GRASP QTL hits; | |
STAT4 | rs897200 | Chr2: 192017771 | C/T | 100% | 0.489 | 0.494 | 0.475 | Enhancer histone marks; DNAse; Proteins bound; Motifs changed; NHGRI/EBI GWAS hits; Selected eQTL hits | TFBS |